In a medium bowl whisk together the eggs, milk, salt, and pepper. Add a tablespoon of butter to a medium pan and melt the butter over medium-high.
Add the egg mixture and the green pepper. Stir constantly with a spatula while breaking into pieces. Cook until the eggs are fully cooked.
Heat a nonstick skillet to medium heat. Butter the bottom of a flour tortilla. Place butter side down into the skillet. Sprinkle the top of the tortilla evenly with cheese.
On one side of the tortilla sprinkle scrambled eggs with green pepper, ham, bacon, and green onion. Once the tortilla has browned on the bottom, fold one side of the tortilla over the top and press down with a spatula.
Remove from the pan and repeat until all the tortillas are gone.